1JGO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1JGO_001 | 1/B/13:22 | tRNA D-loop | geometric HL_2CSX_001 HL_37101.1 | |
| HL_1JGO_010 | 1/B/31:39 | tRNA anticodon loop | geometric HL_1FIR_005 NA | |
| HL_1JGO_003 | 1/B/53:61 | No text annotation | geometric HL_1WZ2_007 HL_75660.6 | |
| HL_1JGO_004 | 1/C/13:22 | tRNA D-loop | geometric HL_2CSX_001 HL_37101.1 | |
| HL_1JGO_011 | 1/C/31:39 | tRNA anticodon loop | geometric HL_7VNV_002 HL_81376.1 | |
| HL_1JGO_006 | 1/C/53:61 | No text annotation | geometric HL_1WZ2_007 HL_75660.6 | |
| HL_1JGO_007 | 1/D/12:23 | No text annotation | geometric HL_361D_002 NA | |
| HL_1JGO_008 | 1/D/31:39 | tRNA anticodon loop | geometric HL_3RG5_006 HL_45359.1 | |
| HL_1JGO_009 | 1/D/53:61 | No text annotation | geometric HL_5NFV_001 HL_69752.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1JGO_002 | No text annotation | ||
| HL_1JGO_005 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_1JGO_001 | 1/B/7:10, 1/B/25:27, 1/B/43:49, 1/B/65:66 | tRNA junction | homologous J4_5AXM_001 J4_58311.1 | |
| J4_1JGO_002 | 1/C/7:10, 1/C/25:27, 1/C/43:49, 1/C/65:66 | tRNA junction | homologous J4_8VU0_001 J4_58311.1 | |
| J4_1JGO_003 | 1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66 | No text annotation |
Problematic loops
No problematic loops
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