HL_1JJ2_012
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGACAACC
- Length
- 9 nucleotides
- Bulged bases
- 1JJ2|1|0|G|336, 1JJ2|1|0|A|337, 1JJ2|1|0|C|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1JJ2_012 not in the Motif Atlas
- Homologous match to HL_4V9F_012
- Geometric discrepancy: 0.0196
- The information below is about HL_4V9F_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.4
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 16
Unit IDs
1JJ2|1|0|G|334
1JJ2|1|0|U|335
1JJ2|1|0|G|336
1JJ2|1|0|A|337
1JJ2|1|0|C|338
1JJ2|1|0|A|339
1JJ2|1|0|A|340
1JJ2|1|0|C|341
1JJ2|1|0|C|342
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L4
- Chain S
- RIBOSOMAL PROTEIN L24
Coloring options: