HL_1JJ2_018
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UUUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 1JJ2|1|0|A|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1JJ2_018 not in the Motif Atlas
- Geometric match to HL_4WF9_018
- Geometric discrepancy: 0.2146
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
1JJ2|1|0|U|623
1JJ2|1|0|U|624
1JJ2|1|0|U|625
1JJ2|1|0|U|626
1JJ2|1|0|G|627
1JJ2|1|0|A|628
1JJ2|1|0|A|629
1JJ2|1|0|A|630
1JJ2|1|0|A|631
1JJ2|1|0|A|632
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN L3
- Chain K
- RIBOSOMAL PROTEIN L15
- Chain X
- RIBOSOMAL PROTEIN L32E
Coloring options: