HL_1JJ2_024

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCCUACAAUA

Length

10 nucleotides

Bulged bases

1JJ2|1|0|U|840, 1JJ2|1|0|A|844, 1JJ2|1|0|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_024 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.0199

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

1JJ2|1|0|U|837
1JJ2|1|0|C|838
1JJ2|1|0|C|839
1JJ2|1|0|U|840
1JJ2|1|0|A|841
1JJ2|1|0|C|842
1JJ2|1|0|A|843
1JJ2|1|0|A|844
1JJ2|1|0|U|845
1JJ2|1|0|A|846

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain Q

RIBOSOMAL PROTEIN L22

Chain Z

RIBOSOMAL PROTEIN L37E