Motif HL_50204.1 Version HL_50204.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8B0X_053 | 8B0X | 0.3027 | 3 | a | LSU rRNA | U | 746 | 1MG | 747 | PSU | 748 | G | 750 | A | 751 | A | 752 | A | 755 | cWW | tSW | cWS |
| 2 | HL_7A0S_022 | 7A0S | 0.2036 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | cWS |
| 3 | HL_4WF9_023 | 4WF9 | 0.2186 | 3 | X | LSU rRNA | C | 789 | G | 790 | U | 791 | G | 793 | A | 794 | A | 795 | G | 798 | cWW | tSW | cWS |
| 4 | HL_8OI5_019 | 8OI5 | 0.0726 | 3 | 1 | LSU rRNA | A | 872 | C | 873 | G | 874 | G | 876 | C | 877 | A | 878 | U | 881 | cWW | tSW | cWS |
| 5 | HL_8P9A_132 | 8P9A | 0.0692 | 3 | AR | LSU rRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | U | 885 | cWW | tSW | cWS |
| 6 | HL_8GLP_023 | 8GLP | 0.0455 | 3 | L5 | LSU rRNA | A | 1593 | C | 1594 | G | 1595 | G | 1597 | C | 1598 | A | 1599 | U | 1602 | cWW | tSW | cWS |
| 7 | HL_9AXU_018 | 9AXU | 0.0000 | 3 | 2 | LSU rRNA | A | 908 | C | 909 | G | 910 | G | 912 | C | 913 | A | 914 | U | 917 | cWW | tSW | cWS |
| 8 | HL_9E6Q_024 | 9E6Q | 0.0671 | 3 | 1 | LSU rRNA | A | 862 | U | 863 | G | 864 | G | 866 | C | 867 | A | 868 | U | 871 | cWW | tSW | cWS |
| 9 | HL_4V9F_024 | 4V9F | 0.1082 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS |
| 10 | HL_9DFE_021 | 9DFE | 0.1599 | 3 | 1A | LSU rRNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS |
| 11 | HL_2QUW_004 | 2QUW | 0.7701 | 2 | D | Hammerhead ribozyme, cleaved fragment | A | 18 | U | 19 | G | 20 | G | 22 | C | 23 | U | 24 | U | 26 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGUGCAAAU | 4 |
| UGAAAAA | 1 |
| UGCUGAAACA | 1 |
| CGUUGAAAAG | 1 |
| AUGUGCAAAU | 1 |
| UCCUACAAUA | 1 |
| GGAUGCAAAC | 1 |
| AUGUGCUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUGCAAA | 4 |
| (1MG)(PSU)(5MU)GAAAA | 1 |
| GCUGAAAC | 1 |
| GUUGAAAA | 1 |
| UGUGCAAA | 1 |
| CCUACAAU | 1 |
| GAUGCAAA | 1 |
| UGUGCUU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-cWS-tSW-F-F
- Heat map statistics
- Min 0.05 | Avg 0.27 | Max 0.84
Coloring options: