HL_1JJ2_030

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1JJ2|1|0|A|1174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.2378

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

1JJ2|1|0|C|1168
1JJ2|1|0|U|1169
1JJ2|1|0|U|1170
1JJ2|1|0|A|1171
1JJ2|1|0|G|1172
1JJ2|1|0|A|1173
1JJ2|1|0|A|1174
1JJ2|1|0|G|1175
1JJ2|1|0|C|1176
1JJ2|1|0|A|1177
1JJ2|1|0|G|1178

Current chains

Chain 0

23S RRNA

Nearby chains