Motif HL_92304.1 Version HL_92304.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_161 | 5J7L | 0.1554 | 1 | DA | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 2 | HL_1MMS_001 | 1MMS | 0.0710 | 1 | C | 23S RIBOSOMAL RNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 3 | HL_5D8H_001 | 5D8H | 0.0000 | 1 | A | LSU rRNA | C | 1174 | U | 1175 | U | 1176 | A | 1177 | G | 1178 | A | 1179 | G | 1181 | C | 1182 | A | 1183 | G | 1184 | cWW | |
| 4 | HL_1HC8_001 | 1HC8 | 0.0708 | 1 | C | LSU rRNA | C | 114 | U | 115 | U | 116 | A | 117 | G | 118 | A | 119 | G | 121 | C | 122 | A | 123 | G | 124 | cWW | |
| 5 | HL_4V9F_030 | 4V9F | 0.3662 | 1 | 0 | LSU rRNA | C | 1168 | U | 1169 | U | 1170 | A | 1171 | G | 1172 | A | 1173 | G | 1175 | C | 1176 | A | 1177 | G | 1178 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 5 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cSW-R-R-tSH-R-R
- Heat map statistics
- Min 0.07 | Avg 0.18 | Max 0.40
Coloring options: