HL_1JJ2_034

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_034 not in the Motif Atlas

Homologous match to HL_4V9F_034

Geometric discrepancy: 0.0191

The information below is about HL_4V9F_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

1JJ2|1|0|G|1387
1JJ2|1|0|U|1388
1JJ2|1|0|G|1389
1JJ2|1|0|A|1390
1JJ2|1|0|G|1391
1JJ2|1|0|A|1392
1JJ2|1|0|A|1393
1JJ2|1|0|C|1394
1JJ2|1|0|C|1395

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E

Chain Q

RIBOSOMAL PROTEIN L22