HL_1JJ2_043

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

1JJ2|1|0|A|1710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_043 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.0277

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1JJ2|1|0|C|1705
1JJ2|1|0|G|1706
1JJ2|1|0|G|1707
1JJ2|1|0|C|1708
1JJ2|1|0|G|1709
1JJ2|1|0|A|1710
1JJ2|1|0|A|1711
1JJ2|1|0|A|1712
1JJ2|1|0|G|1713

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

RIBOSOMAL PROTEIN L19E