HL_1JJ2_059

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_059 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.0195

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1JJ2|1|0|U|2389
1JJ2|1|0|U|2390
1JJ2|1|0|C|2391
1JJ2|1|0|C|2392
1JJ2|1|0|C|2393
1JJ2|1|0|A|2394
1JJ2|1|0|A|2395
1JJ2|1|0|C|2396
1JJ2|1|0|G|2397
1JJ2|1|0|A|2398
1JJ2|1|0|G|2399

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain K

RIBOSOMAL PROTEIN L15

Chain P

RIBOSOMAL PROTEIN L21E