HL_1JJ2_068

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1JJ2|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JJ2_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.025

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

1JJ2|1|0|C|2780
1JJ2|1|0|U|2781
1JJ2|1|0|G|2782
1JJ2|1|0|A|2783
1JJ2|1|0|A|2784
1JJ2|1|0|C|2785
1JJ2|1|0|G|2786
1JJ2|1|0|C|2787
1JJ2|1|0|A|2788
1JJ2|1|0|U|2789
1JJ2|1|0|C|2790
1JJ2|1|0|U|2791
1JJ2|1|0|A|2792
1JJ2|1|0|A|2793
1JJ2|1|0|G|2794

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6

Chain I

RIBOSOMAL PROTEIN L13