HL_1JP0_026

3D structure

PDB id

1JP0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR Structure of the LP5.1 Hairpin from Bacillus RNase P RNA Refined WITHOUT Residual Dipolar Couplings

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUGAGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JP0_026 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2774

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1JP0|26|A|C|8
1JP0|26|A|U|9
1JP0|26|A|G|10
1JP0|26|A|A|11
1JP0|26|A|G|12
1JP0|26|A|A|13
1JP0|26|A|U|14
1JP0|26|A|G|15

Current chains

Chain A

5'-R(*GP*GP*CP*GP*GP*UP*GP*CP*UP*GP*AP*GP*AP*UP*GP*CP*CP*CP*GP*UP*C)-3'

Nearby chains