HL_1JZX_009

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1JZX|1|A|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZX_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.22

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1JZX|1|A|C|316
1JZX|1|A|U|317
1JZX|1|A|G|318
1JZX|1|A|G|319
1JZX|1|A|A|320
1JZX|1|A|A|321
1JZX|1|A|A|322
1JZX|1|A|G|323

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Ribosomal Protein L22