HL_1JZX_011

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1JZX|1|A|G|340, 1JZX|1|A|A|341, 1JZX|1|A|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZX_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2488

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1JZX|1|A|G|338
1JZX|1|A|U|339
1JZX|1|A|G|340
1JZX|1|A|A|341
1JZX|1|A|G|342
1JZX|1|A|A|343
1JZX|1|A|G|344
1JZX|1|A|U|345
1JZX|1|A|C|346

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4