Motif HL_27670.2 Version HL_27670.2 of this group appears in releases 3.95 to 3.96

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-3
1	HL_7A0S_012	7A0S	0.4976	3	T-loop with unstacked turn	X	LSU rRNA	G	338	U	339	A	343	G	344	U	345	C	346	cWW
2	HL_4WF9_012	4WF9	0.1233	3	T-loop with unstacked turn	X	LSU rRNA	G	370	U	371	A	375	A	376	U	377	C	378	cWW	ntWH
3	HL_5J7L_144	5J7L	0.0000	3	T-loop with unstacked turn	DA	LSU rRNA	G	327	U	328	A	332	G	333	C	334	C	335	cWW	tWH
4	HL_4V9F_012	4V9F	0.1088	3	T-loop with unstacked turn	0	LSU rRNA	G	334	U	335	A	339	A	340	C	341	C	342	cWW	tWH
5	HL_9DFE_011	9DFE	0.1227	3	T-loop with unstacked turn (H)	1A	LSU rRNA	G	327	U	328	A	332	G	333	C	334	C	335	cWW	tWH
6	HL_8CRE_007	8CRE	0.1549	3	T-loop with unstacked turn (H)	1	LSU rRNA	G	215	U	216	A	220	A	221	U	222	C	223	cWW	tWH
7	HL_8P9A_119	8P9A	0.1408	3	T-loop with unstacked turn (H)	AR	LSU rRNA	G	216	U	217	A	221	A	222	U	223	C	224	cWW	tWH
8	HL_6DN2_002	6DN2	0.2498	2	T-loop with unstacked turn	X	RNA RIBOSWITCH	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
9	HL_3F2X_002	3F2X	0.2823	2	T-loop with unstacked turn	X	FMN riboswitch	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
10	HL_3F2X_005	3F2X	0.3947	2	T-loop with unstacked turn	X	FMN riboswitch	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
11	HL_6DN2_004	6DN2	0.3795	2	T-loop with unstacked turn	Y	RNA (56-MER)	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
12	HL_4FRG_003	4FRG	0.3658	3	T-loop with unstacked turn	B	cobalamin riboswitch aptamer domain	G	58	U	59	A	63	C	64	U	65	C	66	cWW	tWH
13	HL_4FRN_007	4FRN	0.2754	3	T-loop with unstacked turn	B	Cobalamin riboswitch aptamer domain	G	56	U	57	A	61	C	62	U	63	C	64	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUGAGAAUC	2
GUAUAGUC	2
GUAGAGUC	2
GUUAUACUC	2
GUGAGAGUC	1
GUAAUAAUC	1
GUGACAGCC	1
GUGACAACC	1
GUGAAAGCC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAGAAU	2
UAUAGU	2
UAGAGU	2
UUAUACU	2
UGAGAGU	1
UAAUAAU	1
UGACAGC	1
UGACAAC	1
UGAAAGC	1

Release history

Release	3.95	3.96
Date	2025-03-26	2025-04-23
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with unstacked turn (10)
T-loop with unstacked turn (H) (3)
Basepair signature: cWW-tWH-F-F
Heat map statistics: Min 0.07 | Avg 0.29 | Max 0.59

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