HL_1JZX_032

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZX_032 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1941

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1JZX|1|A|G|1294
1JZX|1|A|U|1295
1JZX|1|A|G|1296
1JZX|1|A|A|1297
1JZX|1|A|G|1298
1JZX|1|A|A|1299
1JZX|1|A|A|1300
1JZX|1|A|U|1301
1JZX|1|A|C|1302

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Ribosomal Protein L22