HL_1JZZ_013

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

1JZZ|1|A|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.115

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1JZZ|1|A|G|423
1JZZ|1|A|G|424
1JZZ|1|A|A|425
1JZZ|1|A|C|426
1JZZ|1|A|C|427
1JZZ|1|A|A|428
1JZZ|1|A|C|429
1JZZ|1|A|C|430

Current chains

Chain A

23S rRNA

Nearby chains