Motif HL_30680.5 Version HL_30680.5 of this group appears in releases 4.1 to 4.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	1-7
1	HL_4OQU_002	4OQU	0.5804	2	Pseudoknot geometry	A	SAM-I-IV-variant	G	32	C	34	G	35	G	36	A	37	C	38	C	40	cWW
2	HL_1WZ2_006	1WZ2	0.6250	2	Pseudoknot geometry	D	tRNA	A	934	C	937	A	938	A	939	G	940	A	941	U	942	cWW
3	HL_3IVK_004	3IVK	0.4099	1	Pseudoknot geometry	M	class I ligase product	G	75	G	77	G	78	C	79	A	80	G	81	C	82	cWW
4	HL_3HHN_009	3HHN	0.3742	1	Pseudoknot geometry	E	Class I ligase ribozyme, self-ligation product	G	75	G	77	G	78	C	79	A	80	G	81	C	82	cWW
5	HL_9DFE_013	9DFE	0.3044	1	Pseudoknot geometry (H)	1A	LSU rRNA	G	410	A	412	C	413	C	414	A	415	C	416	C	417	cWW
6	HL_7A0S_014	7A0S	0.3484	1	Pseudoknot geometry	X	LSU rRNA	G	423	A	425	C	426	C	427	A	428	C	429	C	430	cWW
7	HL_8B0X_045	8B0X	0.3153	1	Pseudoknot geometry (H)	a	LSU rRNA	G	410	A	412	C	413	C	414	A	415	U	416	C	417	cWW
8	HL_4WF9_014	4WF9	0.2952	1	Pseudoknot geometry	X	LSU rRNA	G	456	A	458	C	459	C	460	A	461	U	462	C	463	cWW
9	HL_4V83_220	4V83	0.0000	1		CV	domain 3 of PSIC IGR IRES RNA	U	6161	A	6163	A	6164	G	6165	U	6166	G	6167	G	6168	ncWW
10	HL_3V7E_004	3V7E	0.4639	0	Pseudoknot geometry (H)	D	SAM-I riboswitch	G	223	A	224	C	225	U	226	G	227	G	228	C	229	cWW
11	HL_6MWN_004	6MWN	0.4384	0	Pseudoknot geometry	B	IRES	G	650	C	651	U	652	G	653	G	654	A	655	C	656	cWW
12	HL_5FJC_001	5FJC	0.4132	0	Pseudoknot geometry	A	SAM-I riboswitch	G	23	A	24	C	25	U	26	G	27	G	28	C	29	cWW
13	HL_4AOB_001	4AOB	0.4262	0	Pseudoknot geometry	A	SAM-I riboswitch	G	23	A	24	C	25	U	26	G	27	G	28	C	29	cWW
14	HL_4KQY_001	4KQY	0.3991	0	Pseudoknot geometry	A	SAM-I riboswitch	G	23	A	24	C	25	U	26	G	27	G	28	C	29	cWW
15	HL_6VMY_003	6VMY	0.5983	0	Pseudoknot geometry	A	Cobalamin riboswitch	G	268	U	269	C	270	C	271	C	272	G	273	C	274	cWW
16	HL_5U30_002	5U30	0.5404	0	Pseudoknot geometry	B	sgRNA	U	43	U	44	U	45	C	46	C	47	A	48	G	49	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GACUGGC	4
GUGGCAGC	2
GGACCACC	2
GGACCAUC	2
GACGGACAC	1
ACUCAAGAU	1
UUAAGUGG	1
GCUGGAC	1
GUCCCGC	1
UUUCCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUGG	4
UGGCAG	2
GACCAC	2
GACCAU	2
ACGGACA	1
CUCAAGA	1
UAAGUG	1
CUGGA	1
UCCCG	1
UUCCA	1

Release history

Release	4.1	4.2	4.3	4.4	4.5	4.6	4.7	4.8	4.9	4.10	4.11	4.12	4.13	4.14	4.15
Date	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31	2026-01-28	2026-02-25	2026-03-25	2026-04-22	2026-05-20	2026-06-17	2026-07-15	2026-08-12	2026-09-09	2026-10-07
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Pseudoknot geometry (12)
Pseudoknot geometry (H) (3)
(1)
Basepair signature: cWW-F-F-F-F-F
Heat map statistics: Min 0.10 | Avg 0.47 | Max 0.91

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Coloring options: Nucleotide numbers

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