Motif HL_30680.5 Version HL_30680.5 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5U30_002 | 5U30 | 0.5404 | 0 | Pseudoknot geometry | B | sgRNA | U | 43 | U | 44 | U | 45 | C | 46 | C | 47 | A | 48 | G | 49 | cWW |
| 2 | HL_6VMY_003 | 6VMY | 0.5983 | 0 | Pseudoknot geometry | A | Cobalamin riboswitch | G | 268 | U | 269 | C | 270 | C | 271 | C | 272 | G | 273 | C | 274 | cWW |
| 3 | HL_4KQY_001 | 4KQY | 0.3991 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 4 | HL_4AOB_001 | 4AOB | 0.4262 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 5 | HL_5FJC_001 | 5FJC | 0.4132 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 6 | HL_6MWN_004 | 6MWN | 0.4384 | 0 | Pseudoknot geometry | B | IRES | G | 650 | C | 651 | U | 652 | G | 653 | G | 654 | A | 655 | C | 656 | cWW |
| 7 | HL_3V7E_004 | 3V7E | 0.4639 | 0 | Pseudoknot geometry (H) | D | SAM-I riboswitch | G | 223 | A | 224 | C | 225 | U | 226 | G | 227 | G | 228 | C | 229 | cWW |
| 8 | HL_4V83_220 | 4V83 | 0.0000 | 1 | CV | domain 3 of PSIC IGR IRES RNA | U | 6161 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | ncWW | |
| 9 | HL_4WF9_014 | 4WF9 | 0.2952 | 1 | Pseudoknot geometry | X | LSU rRNA | G | 456 | A | 458 | C | 459 | C | 460 | A | 461 | U | 462 | C | 463 | cWW |
| 10 | HL_8B0X_045 | 8B0X | 0.3153 | 1 | Pseudoknot geometry (H) | a | LSU rRNA | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | U | 416 | C | 417 | cWW |
| 11 | HL_7A0S_014 | 7A0S | 0.3484 | 1 | Pseudoknot geometry | X | LSU rRNA | G | 423 | A | 425 | C | 426 | C | 427 | A | 428 | C | 429 | C | 430 | cWW |
| 12 | HL_9DFE_013 | 9DFE | 0.3044 | 1 | Pseudoknot geometry (H) | 1A | LSU rRNA | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | C | 416 | C | 417 | cWW |
| 13 | HL_3HHN_009 | 3HHN | 0.3742 | 1 | Pseudoknot geometry | E | Class I ligase ribozyme, self-ligation product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 14 | HL_3IVK_004 | 3IVK | 0.4099 | 1 | Pseudoknot geometry | M | class I ligase product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 15 | HL_1WZ2_006 | 1WZ2 | 0.6250 | 2 | Pseudoknot geometry | D | tRNA | A | 934 | C | 937 | A | 938 | A | 939 | G | 940 | A | 941 | U | 942 | cWW |
| 16 | HL_4OQU_002 | 4OQU | 0.5804 | 2 | Pseudoknot geometry | A | SAM-I/IV riboswitch | G | 32 | C | 34 | G | 35 | G | 36 | A | 37 | C | 38 | C | 40 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUGGC | 4 |
| GGACCAUC | 2 |
| GGACCACC | 2 |
| GUGGCAGC | 2 |
| UUUCCAG | 1 |
| GUCCCGC | 1 |
| GCUGGAC | 1 |
| UUAAGUGG | 1 |
| ACUCAAGAU | 1 |
| GACGGACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUGG | 4 |
| GACCAU | 2 |
| GACCAC | 2 |
| UGGCAG | 2 |
| UUCCA | 1 |
| UCCCG | 1 |
| CUGGA | 1 |
| UAAGUG | 1 |
| CUCAAGA | 1 |
| ACGGACA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (12)
- Pseudoknot geometry (H) (3)
- (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.47 | Max 0.91
Coloring options: