HL_1JZZ_028

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1JZZ|1|A|A|1081, 1JZZ|1|A|G|1082, 1JZZ|1|A|C|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_028 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4338

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1JZZ|1|A|C|1075
1JZZ|1|A|U|1076
1JZZ|1|A|U|1077
1JZZ|1|A|A|1078
1JZZ|1|A|G|1079
1JZZ|1|A|A|1080
1JZZ|1|A|A|1081
1JZZ|1|A|G|1082
1JZZ|1|A|C|1083
1JZZ|1|A|A|1084
1JZZ|1|A|G|1085

Current chains

Chain A

23S rRNA

Nearby chains