HL_1JZZ_049

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

1JZZ|1|A|A|2013, 1JZZ|1|A|A|2014, 1JZZ|1|A|G|2015, 1JZZ|1|A|U|2017, 1JZZ|1|A|G|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1JZZ_049 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.2549

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

1JZZ|1|A|G|2010
1JZZ|1|A|U|2011
1JZZ|1|A|A|2012
1JZZ|1|A|A|2013
1JZZ|1|A|A|2014
1JZZ|1|A|G|2015
1JZZ|1|A|A|2016
1JZZ|1|A|U|2017
1JZZ|1|A|G|2018
1JZZ|1|A|C|2019

Current chains

Chain A

23S rRNA

Nearby chains