Motif HL_90642.6 Version HL_90642.6 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_049 | 7A0S | 0.3825 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH | |
| 2 | HL_7RQB_050 | 7RQB | 0.3519 | 3 | 1A | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH | |
| 3 | HL_4V9F_052 | 4V9F | 0.3506 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH | |
| 4 | HL_4WF9_047 | 4WF9 | 0.3551 | 3 | X | LSU rRNA | G | 2054 | U | 2055 | G | 2056 | A | 2060 | U | 2061 | G | 2062 | C | 2063 | cWW | tWH | |
| 5 | HL_8C3A_051 | 8C3A | 0.0600 | 3 | 1 | LSU rRNA | G | 2347 | G | 2348 | G | 2349 | G | 2353 | G | 2354 | G | 2355 | C | 2356 | cWW | tWH | |
| 6 | HL_5TBW_051 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAAGAUGC | 2 |
| GGGAACGGGC | 2 |
| GUAAAGAUGC | 1 |
| GUGCGGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAGAUG | 2 |
| GGAACGGG | 2 |
| UAAAGAUG | 1 |
| UGCGGAGU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.21 | Max 0.38
Coloring options: