HL_1K01_045

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

1K01|1|A|A|1771, 1K01|1|A|C|1772, 1K01|1|A|C|1773, 1K01|1|A|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.1871

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

1K01|1|A|G|1767
1K01|1|A|U|1768
1K01|1|A|U|1769
1K01|1|A|U|1770
1K01|1|A|A|1771
1K01|1|A|C|1772
1K01|1|A|C|1773
1K01|1|A|A|1774
1K01|1|A|A|1775
1K01|1|A|A|1776
1K01|1|A|A|1777
1K01|1|A|U|1778
1K01|1|A|C|1779

Current chains

Chain A

23S rRNA

Nearby chains