HL_1K01_049

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

1K01|1|A|A|2013, 1K01|1|A|A|2014, 1K01|1|A|G|2015, 1K01|1|A|U|2017, 1K01|1|A|G|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_049 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.2522

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

1K01|1|A|G|2010
1K01|1|A|U|2011
1K01|1|A|A|2012
1K01|1|A|A|2013
1K01|1|A|A|2014
1K01|1|A|G|2015
1K01|1|A|A|2016
1K01|1|A|U|2017
1K01|1|A|G|2018
1K01|1|A|C|2019

Current chains

Chain A

23S rRNA

Nearby chains