HL_1K01_053

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1K01|1|A|A|2247, 1K01|1|A|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1473

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1K01|1|A|C|2243
1K01|1|A|C|2244
1K01|1|A|A|2245
1K01|1|A|A|2246
1K01|1|A|A|2247
1K01|1|A|A|2248
1K01|1|A|U|2249
1K01|1|A|G|2250
1K01|1|A|U|2251
1K01|1|A|A|2252
1K01|1|A|A|2253
1K01|1|A|C|2254
1K01|1|A|G|2255

Current chains

Chain A

23S rRNA

Nearby chains