HL_1K01_058

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

1K01|1|A|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1541

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1K01|1|A|C|2383
1K01|1|A|G|2384
1K01|1|A|U|2385
1K01|1|A|G|2386
1K01|1|A|U|2387
1K01|1|A|G|2388
1K01|1|A|G|2389
1K01|1|A|A|2390
1K01|1|A|A|2391
1K01|1|A|G|2392

Current chains

Chain A

23S rRNA

Nearby chains