HL_1K01_060

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

1K01|1|A|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K01_060 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1837

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

1K01|1|A|U|2507
1K01|1|A|G|2508
1K01|1|A|A|2509
1K01|1|A|A|2510
1K01|1|A|G|2511
1K01|1|A|A|2512
1K01|1|A|A|2513
1K01|1|A|G|2514

Current chains

Chain A

23S rRNA

Nearby chains