Motif HL_91104.1 Version HL_91104.1 of this group appears in releases 3.83 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_039 | 5TBW | 0.4170 | 3 | GNRA related | 1 | LSU rRNA | A | 1760 | C | 1761 | U | 1765 | |
| 2 | HL_4V88_198 | 4V88 | 0.3621 | 3 | A6 | SSU rRNA | C | 491 | A | 492 | G | 496 | cWW | |
| 3 | HL_7A0S_029 | 7A0S | 0.3018 | 5 | X | LSU rRNA | C | 1103 | G | 1104 | G | 1110 | cWW | |
| 4 | HL_4YAZ_004 | 4YAZ | 0.0000 | 2 | Mini UNCG | R | Cyclic di-GMP-I riboswitch | C | 56 | C | 58 | G | 60 | cWW |
| 5 | HL_4LFB_005 | 4LFB | 0.2218 | 2 | Mini UNCG | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW |
| 6 | HL_8C3A_063 | 8C3A | 0.4976 | 5 | 1 | LSU rRNA | A | 2869 | C | 2871 | U | 2876 | cWW | |
| 7 | HL_5TBW_062 | 5TBW | 0.5710 | 5 | 1 | LSU rRNA | A | 2897 | C | 2899 | U | 2904 | cWW | |
| 8 | HL_7A0S_060 | 7A0S | 0.6341 | 5 | X | LSU rRNA | U | 2507 | A | 2509 | G | 2514 | cWW | |
| 9 | HL_4V9F_063 | 4V9F | 0.7921 | 5 | 0 | LSU rRNA | U | 2563 | C | 2565 | G | 2570 | cWW | |
| 10 | HL_7RQB_061 | 7RQB | 0.6275 | 5 | 1A | LSU rRNA | U | 2528 | A | 2530 | G | 2535 | cWW | |
| 11 | HL_5J7L_194 | 5J7L | 0.5127 | 5 | DA | LSU rRNA | U | 2528 | A | 2530 | G | 2535 | cWW | |
| 12 | HL_4WF9_057 | 4WF9 | 0.6110 | 5 | X | LSU rRNA | U | 2555 | U | 2557 | G | 2562 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAGAAU | 2 |
| UGAAGAAG | 2 |
| ACCUUU | 1 |
| CAUUCG | 1 |
| CGUAAUAG | 1 |
| CCCUG | 1 |
| CUUUG | 1 |
| UGCAGAAG | 1 |
| UGAAGUAG | 1 |
| UGUAGUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGAA | 3 |
| GAAGAA | 2 |
| CCUU | 1 |
| AUUC | 1 |
| GUAAUA | 1 |
| CCU | 1 |
| UUU | 1 |
| GAAGUA | 1 |
| GUAGUC | 1 |
- Annotations
-
- (9)
- Mini UNCG (2)
- GNRA related (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.42 | Max 0.88
Coloring options: