HL_1K4A_009

3D structure

PDB id

1K4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF AGAA RNA TETRALOOP, NMR, 20 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K4A_009 not in the Motif Atlas

Geometric match to HL_5TBW_075

Geometric discrepancy: 0.3417

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1K4A|9|A|C|5
1K4A|9|A|A|6
1K4A|9|A|G|7
1K4A|9|A|A|8
1K4A|9|A|A|9
1K4A|9|A|G|10

Current chains

Chain A

5'-R(*GP*GP*UP*UP*CP*AP*GP*AP*AP*GP*AP*AP*CP*C)-3'

Nearby chains