HL_1K6G_001

3D structure

PDB id

1K6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of Conserved AGNN Tetraloops: Insights into Rnt1p RNA Processing

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAGUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K6G_001 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.365

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1K6G|1|A|G|9
1K6G|1|A|A|10
1K6G|1|A|G|11
1K6G|1|A|U|12
1K6G|1|A|C|13
1K6G|1|A|C|14

Current chains

Chain A

RNA (5'-R(P*GP*GP*CP*GP*UP*CP*AP*UP*GP*AP*GP*UP*CP*CP*AP*UP*GP*GP*CP*GP*CP*C)-3')

Nearby chains