Motif HL_04783.2 Version HL_04783.2 of this group appears in releases 3.90 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_007 | 4V9F | 0.7588 | 2 | 0 | LSU rRNA | C | 195 | G | 196 | A | 198 | A | 199 | G | 201 | cWW | tSH | ||
| 2 | HL_4C9D_002 | 4C9D | 0.7815 | 0 | D | R3 REPEAT RNA CLEAVAGE PRODUCT | C | 21 | G | 22 | U | 23 | A | 24 | G | 25 | ncWW | |||
| 3 | HL_1OOA_001 | 1OOA | 0.6600 | 1 | C | RNA aptamer | U | 13 | G | 14 | U | 15 | A | 17 | G | 18 | cWW | ntSH | ||
| 4 | HL_3IGI_004 | 3IGI | 0.2892 | 2 | A | Group II catalytic intron D1-D4-3 | G | 135 | G | 136 | C | 139 | A | 140 | C | 141 | cWW | ntSH | ||
| 5 | HL_5J7L_179 | 5J7L | 0.0000 | 1 | GNRA related | DA | LSU rRNA | C | 1806 | G | 1807 | A | 1809 | A | 1810 | G | 1811 | cWW | ntSH | |
| 6 | HL_3OXE_002 | 3OXE | 0.1453 | 1 | GNRA related | A | Glycine riboswitch | G | 49 | G | 50 | A | 52 | A | 53 | C | 54 | cWW | ntSH | |
| 7 | HL_8G9Z_003 | 8G9Z | 0.1709 | 1 | GNRA related | E | Selenocysteine transfer RNA | C | 47||A|C | U | 47||A|D | G | 47||A|F | C | 47||A|G | G | 47||A|H | cWW | ntSH | |
| 8 | HL_3FOZ_005 | 3FOZ | 0.4631 | 4 | D | tRNA | A | 31 | U | 32 | A | 36 | A | 38 | U | 39 | cWW | ntsS | ||
| 9 | HL_3EPH_002 | 3EPH | 0.5004 | 4 | E | tRNA | A | 31 | U | 32 | A | 36 | A | 38 | U | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAACG | 1 |
| CGUAG | 1 |
| UGUAAG | 1 |
| GGAACAC | 1 |
| CGAAAG | 1 |
| GGAAAC | 1 |
| CUAGCG | 1 |
| AUUGAAAAU | 1 |
| AUUGCAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| GCAAC | 1 |
| GUA | 1 |
| GUAA | 1 |
| GAACA | 1 |
| UAGC | 1 |
| UUGAAAA | 1 |
| UUGCAAA | 1 |
Release history
| Release | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- GNRA related (3)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.15 | Avg 0.48 | Max 0.83
Coloring options: