HL_1K8A_056
3D structure
- PDB id
- 1K8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAAGAUAUCG
- Length
- 13 nucleotides
- Bulged bases
- 1K8A|1|A|A|2302, 1K8A|1|A|C|2309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1K8A_056 not in the Motif Atlas
- Homologous match to HL_4V9F_056
- Geometric discrepancy: 0.0389
- The information below is about HL_4V9F_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
1K8A|1|A|C|2298
1K8A|1|A|G|2299
1K8A|1|A|A|2300
1K8A|1|A|A|2301
1K8A|1|A|A|2302
1K8A|1|A|A|2303
1K8A|1|A|G|2304
1K8A|1|A|A|2305
1K8A|1|A|U|2306
1K8A|1|A|A|2307
1K8A|1|A|U|2308
1K8A|1|A|C|2309
1K8A|1|A|G|2310
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain J
- RIBOSOMAL PROTEIN L10E
- Chain R
- RIBOSOMAL PROTEIN L21E
Coloring options: