HL_1K8A_068

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1K8A|1|A|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K8A_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0318

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1K8A|1|A|C|2780
1K8A|1|A|U|2781
1K8A|1|A|G|2782
1K8A|1|A|A|2783
1K8A|1|A|A|2784
1K8A|1|A|C|2785
1K8A|1|A|G|2786
1K8A|1|A|C|2787
1K8A|1|A|A|2788
1K8A|1|A|U|2789
1K8A|1|A|C|2790
1K8A|1|A|U|2791
1K8A|1|A|A|2792
1K8A|1|A|A|2793
1K8A|1|A|G|2794

Current chains

Chain A

23S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN L6

Chain K

RIBOSOMAL PROTEIN L13