HL_1K9M_043

3D structure

PDB id

1K9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

1K9M|1|A|A|1710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K9M_043 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.04

The information below is about HL_4V9F_043

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1K9M|1|A|C|1705
1K9M|1|A|G|1706
1K9M|1|A|G|1707
1K9M|1|A|C|1708
1K9M|1|A|G|1709
1K9M|1|A|A|1710
1K9M|1|A|A|1711
1K9M|1|A|A|1712
1K9M|1|A|G|1713

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E