HL_1KC8_012

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GUGACAACC

Length

9 nucleotides

Bulged bases

1KC8|1|A|G|336, 1KC8|1|A|A|337, 1KC8|1|A|C|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_012 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.0246

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1KC8|1|A|G|334
1KC8|1|A|U|335
1KC8|1|A|G|336
1KC8|1|A|A|337
1KC8|1|A|C|338
1KC8|1|A|A|339
1KC8|1|A|A|340
1KC8|1|A|C|341
1KC8|1|A|C|342

Current chains

Chain A

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L4

Chain U

RIBOSOMAL PROTEIN L24