HL_1KC8_024
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- UCCUACAAUA
- Length
- 10 nucleotides
- Bulged bases
- 1KC8|1|A|U|840, 1KC8|1|A|A|844, 1KC8|1|A|U|845
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KC8_024 not in the Motif Atlas
- Homologous match to HL_4V9F_024
- Geometric discrepancy: 0.042
- The information below is about HL_4V9F_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
1KC8|1|A|U|837
1KC8|1|A|C|838
1KC8|1|A|C|839
1KC8|1|A|U|840
1KC8|1|A|A|841
1KC8|1|A|C|842
1KC8|1|A|A|843
1KC8|1|A|A|844
1KC8|1|A|U|845
1KC8|1|A|A|846
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain S
- RIBOSOMAL PROTEIN L22
Coloring options: