HL_1KC8_062

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

AGCACAUAU

Length

9 nucleotides

Bulged bases

1KC8|1|A|C|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_062 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1218

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1KC8|1|A|A|2506
1KC8|1|A|G|2507
1KC8|1|A|C|2508
1KC8|1|A|A|2509
1KC8|1|A|C|2510
1KC8|1|A|A|2511
1KC8|1|A|U|2512
1KC8|1|A|A|2513
1KC8|1|A|U|2514

Current chains

Chain A

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L10E