Motif HL_52011.1 Version HL_52011.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_062 | 4V9F | 0.2050 | 0 | 0 | LSU rRNA | A | 2506 | G | 2507 | C | 2508 | A | 2509 | C | 2510 | A | 2511 | U | 2512 | A | 2513 | U | 2514 | cWW | tSH |
| 2 | HL_8OI5_057 | 8OI5 | 0.1111 | 0 | 1 | LSU rRNA | C | 2812 | G | 2813 | U | 2814 | U | 2815 | C | 2816 | A | 2817 | U | 2818 | A | 2819 | G | 2820 | cWW | tSH |
| 3 | HL_8P9A_172 | 8P9A | 0.1064 | 0 | AR | LSU rRNA | C | 2840 | G | 2841 | U | 2842 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
| 4 | HL_9DFE_058 | 9DFE | 0.0000 | 0 | 1A | LSU rRNA | C | 2471 | G | 2472 | U | 2473 | C | 2474 | C | 2475 | A | 2476 | C | 2477 | A | 2478 | G | 2479 | cWW | tSH |
| 5 | HL_9E6Q_058 | 9E6Q | 0.1238 | 0 | 1 | LSU rRNA | A | 2585 | G | 2586 | U | 2587 | C | 2588 | C | 2589 | C | 2590 | C | 2591 | A | 2592 | U | 2593 | cWW | tSH |
| 6 | HL_8B0X_087 | 8B0X | 0.1405 | 0 | a | LSU rRNA | A | 2475 | G | 2476 | U | 2477 | U | 2478 | C | 2479 | A | 2480 | U | 2481 | A | 2482 | U | 2483 | cWW | tSH |
| 7 | HL_4WF9_056 | 4WF9 | 0.1820 | 0 | X | LSU rRNA | A | 2498 | G | 2499 | U | 2500 | U | 2501 | C | 2502 | A | 2503 | C | 2504 | A | 2505 | U | 2506 | cWW | tSH |
| 8 | HL_7A0S_059 | 7A0S | 0.2068 | 0 | X | LSU rRNA | A | 2450 | G | 2451 | U | 2452 | C | 2453 | C | 2454 | A | 2455 | U | 2456 | A | 2457 | U | 2458 | cWW | tSH |
| 9 | HL_8GLP_066 | 8GLP | 0.3803 | 0 | L5 | LSU rRNA | C | 4417 | G | 4418 | U | 4419 | PSU | 4420 | C | 4421 | A | 4422 | PSU | 4423 | A | 4424 | G | 4425 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUCAUAG | 2 |
| AGCACAUAU | 1 |
| CGUCCACAG | 1 |
| AGUCCCCAU | 1 |
| AGUUCAUAU | 1 |
| AGUUCACAU | 1 |
| AGUCCAUAU | 1 |
| CGUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAUA | 3 |
| GCACAUA | 1 |
| GUCCACA | 1 |
| GUCCCCA | 1 |
| GUUCACA | 1 |
| GUCCAUA | 1 |
| GU(PSU)CA(PSU)A | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.20 | Max 0.45
Coloring options: