HL_1KC8_068

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1KC8|1|A|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.03

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1KC8|1|A|C|2780
1KC8|1|A|U|2781
1KC8|1|A|G|2782
1KC8|1|A|A|2783
1KC8|1|A|A|2784
1KC8|1|A|C|2785
1KC8|1|A|G|2786
1KC8|1|A|C|2787
1KC8|1|A|A|2788
1KC8|1|A|U|2789
1KC8|1|A|C|2790
1KC8|1|A|U|2791
1KC8|1|A|A|2792
1KC8|1|A|A|2793
1KC8|1|A|G|2794

Current chains

Chain A

23S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN L6

Chain K

RIBOSOMAL PROTEIN L13