HL_1KD1_013
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUGGAUAUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KD1_013 not in the Motif Atlas
- Homologous match to HL_4V9F_013
- Geometric discrepancy: 0.046
- The information below is about HL_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91228.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|G|390
1KD1|1|A|U|391
1KD1|1|A|U|392
1KD1|1|A|G|393
1KD1|1|A|G|394
1KD1|1|A|A|395
1KD1|1|A|U|396
1KD1|1|A|A|397
1KD1|1|A|U|398
1KD1|1|A|C|399
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: