HL_1KD1_018
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 1KD1|1|A|A|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KD1_018 not in the Motif Atlas
- Geometric match to HL_4WF9_018
- Geometric discrepancy: 0.2107
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
1KD1|1|A|U|623
1KD1|1|A|U|624
1KD1|1|A|U|625
1KD1|1|A|U|626
1KD1|1|A|G|627
1KD1|1|A|A|628
1KD1|1|A|A|629
1KD1|1|A|A|630
1KD1|1|A|A|631
1KD1|1|A|A|632
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain D
- RIBOSOMAL PROTEIN L3
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain Z
- RIBOSOMAL PROTEIN L32E
Coloring options: