HL_1KD1_037

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

1KD1|1|A|U|1505, 1KD1|1|A|U|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KD1_037 not in the Motif Atlas

Homologous match to HL_4V9F_037

Geometric discrepancy: 0.0334

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

1KD1|1|A|G|1498
1KD1|1|A|U|1499
1KD1|1|A|U|1500
1KD1|1|A|A|1501
1KD1|1|A|A|1502
1KD1|1|A|U|1503
1KD1|1|A|A|1504
1KD1|1|A|U|1505
1KD1|1|A|U|1506
1KD1|1|A|C|1507

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E

Chain T

RIBOSOMAL PROTEIN L23