Motif HL_77449.1 Version HL_77449.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_161 | 8P9A | 0.6839 | 1 | AR | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | ||
| 2 | HL_8GLP_054 | 8GLP | 0.6226 | 1 | L5 | LSU rRNA | U | 3796 | C | 3797 | U | 3798 | A | 3799 | A | 3800 | U | 3801 | A | 3803 | G | 3804 | cWW | ncWW | |
| 3 | HL_8OI5_045 | 8OI5 | 0.6287 | 1 | 1 | LSU rRNA | U | 2270 | C | 2271 | U | 2272 | A | 2273 | A | 2274 | U | 2275 | A | 2277 | G | 2278 | cWW | ncWW | |
| 4 | HL_9AXU_046 | 9AXU | 0.6045 | 1 | 2 | LSU rRNA | U | 2380 | C | 2381 | U | 2382 | A | 2383 | A | 2384 | C | 2385 | A | 2387 | G | 2388 | cWW | tWH | |
| 5 | HL_9DFE_034 | 9DFE | 0.1371 | 2 | 1A | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH | |
| 6 | HL_8B0X_063 | 8B0X | 0.1001 | 2 | a | LSU rRNA | G | 1391 | U | 1392 | U | 1393 | A | 1394 | A | 1395 | U | 1396 | A | 1397 | C | 1400 | cWW | tWH | |
| 7 | HL_9E6Q_034 | 9E6Q | 0.1022 | 2 | 1 | LSU rRNA | G | 1520 | U | 1521 | U | 1522 | A | 1523 | A | 1524 | U | 1525 | A | 1526 | C | 1529 | cWW | tWH | |
| 8 | HL_4V9F_037 | 4V9F | 0.0913 | 2 | 0 | LSU rRNA | G | 1498 | U | 1499 | U | 1500 | A | 1501 | A | 1502 | U | 1503 | A | 1504 | C | 1507 | cWW | tWH | |
| 9 | HL_9AXU_032 | 9AXU | 0.0000 | 2 | 2 | LSU rRNA | G | 1634 | U | 1635 | U | 1636 | A | 1637 | A | 1638 | U | 1639 | A | 1640 | C | 1643 | cWW | tWH | |
| 10 | HL_8OI5_031 | 8OI5 | 0.0956 | 2 | 1 | LSU rRNA | G | 1595 | U | 1596 | U | 1597 | A | 1598 | A | 1599 | A | 1600 | A | 1601 | C | 1604 | cWW | tWH | |
| 11 | HL_8P9A_146 | 8P9A | 0.1110 | 2 | AR | LSU rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | C | 1608 | cWW | tWH | |
| 12 | HL_8GLP_038 | 8GLP | 0.1179 | 2 | L5 | LSU rRNA | G | 2523 | U | 2524 | U | 2525 | C | 2526 | A | 2527 | G | 2528 | A | 2529 | C | 2532 | cWW | tWH | |
| 13 | HL_4WF9_035 | 4WF9 | 0.1502 | 2 | X | LSU rRNA | G | 1426 | U | 1427 | U | 1428 | G | 1429 | A | 1430 | U | 1431 | A | 1432 | C | 1435 | cWW | tWH | |
| 14 | HL_7A0S_035 | 7A0S | 0.4440 | 2 | X | LSU rRNA | G | 1402 | U | 1403 | C | 1404 | A | 1405 | A | 1406 | G | 1407 | A | 1408 | C | 1411 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUAUUC | 5 |
| UCUAAUUAG | 3 |
| UCUAACUAG | 1 |
| GUUAAAAUUC | 1 |
| GUUAAGAUUC | 1 |
| GUUCAGAUCC | 1 |
| GUUGAUAUUC | 1 |
| GUCAAGAUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAUU | 5 |
| CUAAUUA | 3 |
| CUAACUA | 1 |
| UUAAAAUU | 1 |
| UUAAGAUU | 1 |
| UUCAGAUC | 1 |
| UUGAUAUU | 1 |
| UCAAGAUU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (14)
- Basepair signature
- cWW-tWH-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.37 | Max 0.88
Coloring options: