HL_1KD1_043

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

1KD1|1|A|A|1710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KD1_043 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.0434

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1KD1|1|A|C|1705
1KD1|1|A|G|1706
1KD1|1|A|G|1707
1KD1|1|A|C|1708
1KD1|1|A|G|1709
1KD1|1|A|A|1710
1KD1|1|A|A|1711
1KD1|1|A|A|1712
1KD1|1|A|G|1713

Current chains

Chain A

23S RRNA

Nearby chains

Chain Q

RIBOSOMAL PROTEIN L19E