HL_1KD1_059
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUCCCAACGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KD1_059 not in the Motif Atlas
- Homologous match to HL_4V9F_059
- Geometric discrepancy: 0.0354
- The information below is about HL_4V9F_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
1KD1|1|A|U|2389
1KD1|1|A|U|2390
1KD1|1|A|C|2391
1KD1|1|A|C|2392
1KD1|1|A|C|2393
1KD1|1|A|A|2394
1KD1|1|A|A|2395
1KD1|1|A|C|2396
1KD1|1|A|G|2397
1KD1|1|A|A|2398
1KD1|1|A|G|2399
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain R
- RIBOSOMAL PROTEIN L21E
Coloring options: