HL_1KD1_068
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 1KD1|1|A|G|2786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KD1_068 not in the Motif Atlas
- Homologous match to HL_4V9F_068
- Geometric discrepancy: 0.0305
- The information below is about HL_4V9F_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 10
Unit IDs
1KD1|1|A|C|2780
1KD1|1|A|U|2781
1KD1|1|A|G|2782
1KD1|1|A|A|2783
1KD1|1|A|A|2784
1KD1|1|A|C|2785
1KD1|1|A|G|2786
1KD1|1|A|C|2787
1KD1|1|A|A|2788
1KD1|1|A|U|2789
1KD1|1|A|C|2790
1KD1|1|A|U|2791
1KD1|1|A|A|2792
1KD1|1|A|A|2793
1KD1|1|A|G|2794
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN L6
- Chain K
- RIBOSOMAL PROTEIN L13
Coloring options: