3D structure

PDB id
1KOG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of E. coli threonyl-tRNA synthetase interacting with the essential domain of its mRNA operator
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UUUCGUGUG
Length
9 nucleotides
Bulged bases
1KOG|1|O|G|88, 1KOG|1|O|U|89
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_21372.1
Basepair signature
cWW-F-cSH-F-F
Number of instances in this motif group
2

Unit IDs

1KOG|1|O|U|82
1KOG|1|O|U|83
1KOG|1|O|U|84
1KOG|1|O|C|85
1KOG|1|O|G|86
1KOG|1|O|U|87
1KOG|1|O|G|88
1KOG|1|O|U|89
1KOG|1|O|G|90

Current chains

Chain O
Threonyl-tRNA synthetase mRNA

Nearby chains

Chain G
Threonyl-tRNA synthetase

Coloring options:

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