HL_1KQS_010
3D structure
- PDB id
- 1KQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 1KQS|1|0|C|318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KQS_010 not in the Motif Atlas
- Homologous match to HL_4V9F_010
- Geometric discrepancy: 0.0435
- The information below is about HL_4V9F_010
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_13999.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
1KQS|1|0|U|312
1KQS|1|0|U|313
1KQS|1|0|G|314
1KQS|1|0|G|315
1KQS|1|0|A|316
1KQS|1|0|A|317
1KQS|1|0|C|318
1KQS|1|0|A|319
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L4
- Chain S
- RIBOSOMAL PROTEIN L24
- Chain X
- RIBOSOMAL PROTEIN L32E
Coloring options: