HL_1KQS_018
3D structure
- PDB id
- 1KQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUUGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 1KQS|1|0|A|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KQS_018 not in the Motif Atlas
- Geometric match to HL_4WF9_018
- Geometric discrepancy: 0.2127
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
1KQS|1|0|U|623
1KQS|1|0|U|624
1KQS|1|0|U|625
1KQS|1|0|U|626
1KQS|1|0|G|627
1KQS|1|0|A|628
1KQS|1|0|A|629
1KQS|1|0|A|630
1KQS|1|0|A|631
1KQS|1|0|A|632
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN L3
- Chain K
- RIBOSOMAL PROTEIN L15
- Chain X
- RIBOSOMAL PROTEIN L32E
Coloring options: