HL_1KQS_024

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCCUACAAUA

Length

10 nucleotides

Bulged bases

1KQS|1|0|U|840, 1KQS|1|0|A|844, 1KQS|1|0|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_024 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.0331

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

1KQS|1|0|U|837
1KQS|1|0|C|838
1KQS|1|0|C|839
1KQS|1|0|U|840
1KQS|1|0|A|841
1KQS|1|0|C|842
1KQS|1|0|A|843
1KQS|1|0|A|844
1KQS|1|0|U|845
1KQS|1|0|A|846

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain Q

RIBOSOMAL PROTEIN L22

Chain Z

RIBOSOMAL PROTEIN L37E