HL_1KQS_031

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_031 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.1294

The information below is about HL_5D8H_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

1KQS|1|0|C|1196
1KQS|1|0|G|1197
1KQS|1|0|U|1198
1KQS|1|0|A|1199
1KQS|1|0|A|1200
1KQS|1|0|C|1201
1KQS|1|0|A|1202
1KQS|1|0|G|1203

Current chains

Chain 0

23S RRNA

Nearby chains